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commercial solutions
* software marked by an asterisk are used by UHNMAC
Agilent
* GeneSpring GX: statistical tools for fast visualization and analysis of expression data
* CGH Analytics
* ChIP Analytics
* Feature Extraction
Signet
Varia
BioDiscovery Inc.
ImaGene: image analysis features
ImaGene CGH: statistical-based and customizable Gain / Loss Call Algorithm plus advanced chromosomal visualization
Nexus Copy Number: integration of phenotypes with genomic events
GeneDirector
Array Results Manager
eBioinformatics
eBio Tools: collection of more than 300 open source bioinformatics programs
eBioX: use eBioTools through a friendly graphical interface
GE Healthcare
ImageQuant
Invitrogen
Vector NTI: experimental design, mining, analysis, presentation, and storage of biological data
Vector NTI Advance: speed and simplify your cloning experiments
iPath
Perkin Elmer
* Quantarray (currently ScanArray)
ProScanArray
Koada Technology
Koadarray: automated microarray image analysis and quantification
Media Cybernetics
Array-Pro Analyzer
Molecular Devices (MDS Analytical Technologies)
* GenePix: software spot finding
Acuity: software advanced analysis ensuring the most accurate data from both low- and high-density arrays
TIBCO Software Inc.
Spotfire: interact with data in a faster environemtn and visualize information
vizXlabs
GeneSifter: incorporate sophisticated data management and computational analysis